{
  "_id": "6a105fafacfb0bcc41ca66eb",
  "Package": "wbcmd",
  "Title": "Wrapper Functions for 'Connectome Workbench' Commands",
  "Version": "0.1.0",
  "Authors@R": "person(\"Athanasia Mo\", \"Mowinckel\", , \"a.m.mowinckel@psykologi.uio.no\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-5756-0223\"))",
  "Description": "Provides R wrapper functions for the 'Connectome\nWorkbench' command-line tool ('wb_command'). Includes a central\ndispatcher for executing workbench commands, environment\ndetection, and convenience wrappers for common operations on\nConnectivity Informatics Technology Initiative (CIFTI),\nGeometry Informatics Technology Initiative (GIFTI), and surface\nfiles.",
  "License": "MIT + file LICENSE",
  "URL": "https://lcbc-uio.github.io/wbcmd/,\nhttps://github.com/lcbc-uio/wbcmd",
  "BugReports": "https://github.com/lcbc-uio/wbcmd/issues",
  "SystemRequirements": "Connectome Workbench\n(https://www.humanconnectome.org/software/connectome-workbench)",
  "Config/testthat/edition": "3",
  "Config/testthat/parallel": "true",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake make libuv1-dev libxml2-dev",
  "Repository": "https://lcbc-uio.r-universe.dev",
  "Date/Publication": "2026-02-23 21:54:53 UTC",
  "RemoteUrl": "https://github.com/LCBC-UiO/wbcmd",
  "RemoteRef": "HEAD",
  "RemoteSha": "855466d27f77f2d1f95128930bfd21ebee1231ff",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-08 08:52:19 UTC",
    "User": "root"
  },
  "Author": "Athanasia Mo Mowinckel [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0002-5756-0223>)",
  "Maintainer": "Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>",
  "MD5sum": "d1588f24c5049e86cd7dfbe2ba428e1f",
  "_user": "lcbc-uio",
  "_type": "src",
  "_file": "wbcmd_0.1.0.tar.gz",
  "_fileid": "0015554a4bbd721e6d67ef02c581431bce00c7e4461630e8696977186ecba91a",
  "_filesize": 210613,
  "_sha256": "0015554a4bbd721e6d67ef02c581431bce00c7e4461630e8696977186ecba91a",
  "_created": "2026-05-08T08:52:19.000Z",
  "_published": "2026-05-22T13:52:47.486Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77393461544,
      "time": 137,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6875475501"
    },
    {
      "job": 77393461974,
      "time": 130,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6875475203"
    },
    {
      "job": 77393461796,
      "time": 112,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6875467662"
    },
    {
      "job": 77393461685,
      "time": 103,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6875465538"
    },
    {
      "job": 77393460867,
      "time": 190,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6875436132"
    },
    {
      "job": 77393460798,
      "time": 127,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7162176933"
    },
    {
      "job": 77393461783,
      "time": 96,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6875463603"
    },
    {
      "job": 77393462077,
      "time": 71,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6875456629"
    },
    {
      "job": 77393461608,
      "time": 92,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6875463459"
    }
  ],
  "_buildurl": "https://github.com/r-universe/lcbc-uio/actions/runs/25546402344",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/LCBC-UiO/wbcmd",
  "_commit": {
    "id": "855466d27f77f2d1f95128930bfd21ebee1231ff",
    "author": "Athanasia Monika Mowinckel <a.m.mowinckel@psykologi.uio.no>",
    "committer": "Athanasia Monika Mowinckel <a.m.mowinckel@psykologi.uio.no>",
    "message": "update readme\n",
    "time": 1771883693
  },
  "_maintainer": {
    "name": "Athanasia Mo Mowinckel",
    "email": "a.m.mowinckel@psykologi.uio.no",
    "login": "drmowinckels",
    "mastodon": "@Drmowinckels@fosstodon.org",
    "bluesky": "@drmowinckels.io",
    "orcid": "0000-0002-5756-0223",
    "uuid": 14014329
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "lifecycle",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "roxygen2",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "pkgdown",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    }
  ],
  "_owner": "lcbc-uio",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-07",
      "n": 2
    },
    {
      "week": "2026-08",
      "n": 1
    },
    {
      "week": "2026-09",
      "n": 5
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "drmowinckels",
      "count": 8,
      "uuid": 14014329
    }
  ],
  "_userbio": {
    "uuid": 32741531,
    "type": "organization",
    "name": "Center for Lifespan Changes in Brain and Cognition, University of Oslo",
    "description": "Online repository of supplemental materials and scripts. Part of @Lifebrain. "
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/wbcmd"
  },
  "_devurl": "https://github.com/lcbc-uio/wbcmd",
  "_pkgdown": "https://lcbc-uio.github.io/wbcmd/",
  "_searchresults": 4,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/wbcmd.html",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "check_wb_result",
    "cifti_average",
    "cifti_correlation",
    "cifti_dilate",
    "cifti_find_clusters",
    "cifti_gradient",
    "cifti_math",
    "cifti_parcellate",
    "cifti_reduce",
    "cifti_stats",
    "cifti_weighted_stats",
    "file_information",
    "get_wb_path",
    "get_wb_setting",
    "get_wb_verbosity",
    "have_wb",
    "metric_math",
    "metric_stats",
    "set_wb_path",
    "surface_curvature",
    "surface_distortion",
    "surface_generate_inflated",
    "surface_geodesic_distance",
    "surface_information",
    "surface_vertex_areas",
    "volume_math",
    "volume_to_surface_mapping",
    "wb_cmd",
    "wb_help",
    "wb_help_rd",
    "wb_sitrep",
    "wb_version"
  ],
  "_help": [
    {
      "page": "check_wb_result",
      "title": "Check the result of a workbench command",
      "topics": [
        "check_wb_result"
      ]
    },
    {
      "page": "cifti_average",
      "title": "Average multiple CIFTI files",
      "topics": [
        "cifti_average"
      ]
    },
    {
      "page": "cifti_correlation",
      "title": "Compute correlation of CIFTI rows",
      "topics": [
        "cifti_correlation"
      ]
    },
    {
      "page": "cifti_dilate",
      "title": "Dilate a CIFTI file",
      "topics": [
        "cifti_dilate"
      ]
    },
    {
      "page": "cifti_find_clusters",
      "title": "Find clusters in a CIFTI file",
      "topics": [
        "cifti_find_clusters"
      ]
    },
    {
      "page": "cifti_gradient",
      "title": "Compute gradient of a CIFTI file",
      "topics": [
        "cifti_gradient"
      ]
    },
    {
      "page": "cifti_math",
      "title": "Evaluate expression on CIFTI files",
      "topics": [
        "cifti_math"
      ]
    },
    {
      "page": "cifti_parcellate",
      "title": "Parcellate a CIFTI file",
      "topics": [
        "cifti_parcellate"
      ]
    },
    {
      "page": "cifti_reduce",
      "title": "Reduce a CIFTI file along a dimension",
      "topics": [
        "cifti_reduce"
      ]
    },
    {
      "page": "cifti_stats",
      "title": "Compute statistics on a CIFTI file",
      "topics": [
        "cifti_stats"
      ]
    },
    {
      "page": "cifti_weighted_stats",
      "title": "Compute weighted statistics on a CIFTI file",
      "topics": [
        "cifti_weighted_stats"
      ]
    },
    {
      "page": "file_information",
      "title": "Display information about a file",
      "topics": [
        "file_information"
      ]
    },
    {
      "page": "get_wb_path",
      "title": "Find the wb_command executable",
      "topics": [
        "get_wb_path"
      ]
    },
    {
      "page": "get_wb_setting",
      "title": "Look up a workbench setting",
      "topics": [
        "get_wb_setting"
      ]
    },
    {
      "page": "get_wb_verbosity",
      "title": "Get the workbench verbosity setting",
      "topics": [
        "get_wb_verbosity"
      ]
    },
    {
      "page": "have_wb",
      "title": "Check if Connectome Workbench is available",
      "topics": [
        "have_wb"
      ]
    },
    {
      "page": "metric_math",
      "title": "Evaluate expression on metric files",
      "topics": [
        "metric_math"
      ]
    },
    {
      "page": "metric_stats",
      "title": "Compute spatial statistics on a metric file",
      "topics": [
        "metric_stats"
      ]
    },
    {
      "page": "set_wb_path",
      "title": "Set the path to wb_command",
      "topics": [
        "set_wb_path"
      ]
    },
    {
      "page": "surface_curvature",
      "title": "Compute surface curvature",
      "topics": [
        "surface_curvature"
      ]
    },
    {
      "page": "surface_distortion",
      "title": "Measure distortion between surfaces",
      "topics": [
        "surface_distortion"
      ]
    },
    {
      "page": "surface_generate_inflated",
      "title": "Generate inflated surface",
      "topics": [
        "surface_generate_inflated"
      ]
    },
    {
      "page": "surface_geodesic_distance",
      "title": "Compute geodesic distance from a vertex",
      "topics": [
        "surface_geodesic_distance"
      ]
    },
    {
      "page": "surface_information",
      "title": "Display surface information",
      "topics": [
        "surface_information"
      ]
    },
    {
      "page": "surface_vertex_areas",
      "title": "Compute vertex areas of a surface",
      "topics": [
        "surface_vertex_areas"
      ]
    },
    {
      "page": "volume_math",
      "title": "Evaluate expression on volume files",
      "topics": [
        "volume_math"
      ]
    },
    {
      "page": "volume_to_surface_mapping",
      "title": "Map volume data to a surface",
      "topics": [
        "volume_to_surface_mapping"
      ]
    },
    {
      "page": "wb_cmd",
      "title": "Execute a Connectome Workbench command",
      "topics": [
        "wb_cmd"
      ]
    },
    {
      "page": "wb_help",
      "title": "Access wb_command help text",
      "topics": [
        "wb_help"
      ]
    },
    {
      "page": "wb_help_rd",
      "title": "Render wb_command CLI help as Rd markup",
      "topics": [
        "wb_help_rd"
      ]
    },
    {
      "page": "wb_sitrep",
      "title": "Situation report for Connectome Workbench",
      "topics": [
        "wb_sitrep"
      ]
    },
    {
      "page": "wb_version",
      "title": "Get Connectome Workbench version",
      "topics": [
        "wb_version"
      ]
    }
  ],
  "_readme": "https://github.com/LCBC-UiO/wbcmd/raw/HEAD/README.md",
  "_rundeps": [
    "brew",
    "callr",
    "cli",
    "commonmark",
    "cpp11",
    "desc",
    "evaluate",
    "fs",
    "glue",
    "highr",
    "knitr",
    "lifecycle",
    "pkgbuild",
    "pkgload",
    "processx",
    "ps",
    "R6",
    "rlang",
    "roxygen2",
    "rprojroot",
    "withr",
    "xfun",
    "xml2",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "wbcmd.Rmd",
      "filename": "wbcmd.html",
      "title": "Getting started with wbcmd",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Finding the binary",
        "The direct route",
        "Wrappers",
        "Parcellate CIFTI data",
        "Compute a correlation matrix",
        "Reduce across maps",
        "Surface curvature",
        "Map a volume to a surface",
        "Math expressions",
        "Getting help",
        "Using wbcmd with ciftiTools",
        "Controlling verbosity"
      ],
      "created": "2026-02-12 20:43:07",
      "modified": "2026-02-23 21:29:15",
      "commits": 2
    }
  ],
  "_score": 3.1760912590556813,
  "_indexed": true,
  "_nocasepkg": "wbcmd",
  "_universes": [
    "lcbc-uio",
    "drmowinckels"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-08T08:54:34.000Z",
      "distro": "noble",
      "commit": "855466d27f77f2d1f95128930bfd21ebee1231ff",
      "fileid": "879168642918d05d5e24ca7fa2cc7caa28671f7c1c961443d13c3c6ac65b7d6e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lcbc-uio/actions/runs/25546402344"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-08T08:54:33.000Z",
      "distro": "noble",
      "commit": "855466d27f77f2d1f95128930bfd21ebee1231ff",
      "fileid": "62a0356d1474d95f33f461af2981540d78a162c8919b13740b758d89b655d107",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lcbc-uio/actions/runs/25546402344"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-08T08:54:06.000Z",
      "commit": "855466d27f77f2d1f95128930bfd21ebee1231ff",
      "fileid": "1bdeac075805dee8b7d9c34d1f37446d8474d25f6cbb2134d372e6de7036b803",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lcbc-uio/actions/runs/25546402344"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-08T08:53:59.000Z",
      "commit": "855466d27f77f2d1f95128930bfd21ebee1231ff",
      "fileid": "6545be53691240b9d97b8be0406249020215f9afee8657651de896e2d1e49e40",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lcbc-uio/actions/runs/25546402344"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-08T08:53:45.000Z",
      "commit": "855466d27f77f2d1f95128930bfd21ebee1231ff",
      "fileid": "26affafb6777a6ff4f709d03ee3b2dd2f56242d2073dc6b813fc0035a617967d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lcbc-uio/actions/runs/25546402344"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-08T08:53:23.000Z",
      "commit": "855466d27f77f2d1f95128930bfd21ebee1231ff",
      "fileid": "e75c7a68e7c817d220858fdfc384f600bf02a0b126e59d34dd7bf8821dad83e3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lcbc-uio/actions/runs/25546402344"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-08T08:53:47.000Z",
      "commit": "855466d27f77f2d1f95128930bfd21ebee1231ff",
      "fileid": "03f2e89a2155e1e9820efcb336c185ad3187b95545af873be8fe4eb83f9f4905",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lcbc-uio/actions/runs/25546402344"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-05-22T13:52:31.000Z",
      "commit": "855466d27f77f2d1f95128930bfd21ebee1231ff",
      "fileid": "b2a0ee626440877c92e46dd9f1447614b56c517b9f3231ba963626f626ef89d5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/lcbc-uio/actions/runs/25546402344"
    }
  ]
}