{
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  "Package": "wbcmd",
  "Title": "Wrapper Functions for 'Connectome Workbench' Commands",
  "Version": "0.1.0",
  "Authors@R": "person(\"Athanasia Mo\", \"Mowinckel\", , \"a.m.mowinckel@psykologi.uio.no\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-5756-0223\"))",
  "Description": "Provides R wrapper functions for the 'Connectome\nWorkbench' command-line tool ('wb_command'). Includes a central\ndispatcher for executing workbench commands, environment\ndetection, and convenience wrappers for common operations on\nConnectivity Informatics Technology Initiative (CIFTI),\nGeometry Informatics Technology Initiative (GIFTI), and surface\nfiles.",
  "License": "MIT + file LICENSE",
  "URL": "https://lcbc-uio.github.io/wbcmd/,\nhttps://github.com/lcbc-uio/wbcmd",
  "BugReports": "https://github.com/lcbc-uio/wbcmd/issues",
  "SystemRequirements": "Connectome Workbench\n(https://www.humanconnectome.org/software/connectome-workbench)",
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  "Encoding": "UTF-8",
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  "Config/pak/sysreqs": "cmake make libuv1-dev libxml2-dev",
  "Repository": "https://lcbc-uio.r-universe.dev",
  "Date/Publication": "2026-02-23 21:54:53 UTC",
  "RemoteUrl": "https://github.com/LCBC-UiO/wbcmd",
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    "User": "root"
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  "Author": "Athanasia Mo Mowinckel [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0002-5756-0223>)",
  "Maintainer": "Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>",
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    "name": "Center for Lifespan Changes in Brain and Cognition, University of Oslo",
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    "cifti_correlation",
    "cifti_dilate",
    "cifti_find_clusters",
    "cifti_gradient",
    "cifti_math",
    "cifti_parcellate",
    "cifti_reduce",
    "cifti_stats",
    "cifti_weighted_stats",
    "file_information",
    "get_wb_path",
    "get_wb_setting",
    "get_wb_verbosity",
    "have_wb",
    "metric_math",
    "metric_stats",
    "set_wb_path",
    "surface_curvature",
    "surface_distortion",
    "surface_generate_inflated",
    "surface_geodesic_distance",
    "surface_information",
    "surface_vertex_areas",
    "volume_math",
    "volume_to_surface_mapping",
    "wb_cmd",
    "wb_help",
    "wb_help_rd",
    "wb_sitrep",
    "wb_version"
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    {
      "page": "check_wb_result",
      "title": "Check the result of a workbench command",
      "topics": [
        "check_wb_result"
      ]
    },
    {
      "page": "cifti_average",
      "title": "Average multiple CIFTI files",
      "topics": [
        "cifti_average"
      ]
    },
    {
      "page": "cifti_correlation",
      "title": "Compute correlation of CIFTI rows",
      "topics": [
        "cifti_correlation"
      ]
    },
    {
      "page": "cifti_dilate",
      "title": "Dilate a CIFTI file",
      "topics": [
        "cifti_dilate"
      ]
    },
    {
      "page": "cifti_find_clusters",
      "title": "Find clusters in a CIFTI file",
      "topics": [
        "cifti_find_clusters"
      ]
    },
    {
      "page": "cifti_gradient",
      "title": "Compute gradient of a CIFTI file",
      "topics": [
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      ]
    },
    {
      "page": "cifti_math",
      "title": "Evaluate expression on CIFTI files",
      "topics": [
        "cifti_math"
      ]
    },
    {
      "page": "cifti_parcellate",
      "title": "Parcellate a CIFTI file",
      "topics": [
        "cifti_parcellate"
      ]
    },
    {
      "page": "cifti_reduce",
      "title": "Reduce a CIFTI file along a dimension",
      "topics": [
        "cifti_reduce"
      ]
    },
    {
      "page": "cifti_stats",
      "title": "Compute statistics on a CIFTI file",
      "topics": [
        "cifti_stats"
      ]
    },
    {
      "page": "cifti_weighted_stats",
      "title": "Compute weighted statistics on a CIFTI file",
      "topics": [
        "cifti_weighted_stats"
      ]
    },
    {
      "page": "file_information",
      "title": "Display information about a file",
      "topics": [
        "file_information"
      ]
    },
    {
      "page": "get_wb_path",
      "title": "Find the wb_command executable",
      "topics": [
        "get_wb_path"
      ]
    },
    {
      "page": "get_wb_setting",
      "title": "Look up a workbench setting",
      "topics": [
        "get_wb_setting"
      ]
    },
    {
      "page": "get_wb_verbosity",
      "title": "Get the workbench verbosity setting",
      "topics": [
        "get_wb_verbosity"
      ]
    },
    {
      "page": "have_wb",
      "title": "Check if Connectome Workbench is available",
      "topics": [
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      ]
    },
    {
      "page": "metric_math",
      "title": "Evaluate expression on metric files",
      "topics": [
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      ]
    },
    {
      "page": "metric_stats",
      "title": "Compute spatial statistics on a metric file",
      "topics": [
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      ]
    },
    {
      "page": "set_wb_path",
      "title": "Set the path to wb_command",
      "topics": [
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      ]
    },
    {
      "page": "surface_curvature",
      "title": "Compute surface curvature",
      "topics": [
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      ]
    },
    {
      "page": "surface_distortion",
      "title": "Measure distortion between surfaces",
      "topics": [
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      ]
    },
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      "title": "Generate inflated surface",
      "topics": [
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      ]
    },
    {
      "page": "surface_geodesic_distance",
      "title": "Compute geodesic distance from a vertex",
      "topics": [
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      "title": "Display surface information",
      "topics": [
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      ]
    },
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      "title": "Compute vertex areas of a surface",
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    },
    {
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      "title": "Evaluate expression on volume files",
      "topics": [
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    },
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      "title": "Map volume data to a surface",
      "topics": [
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    },
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      "page": "wb_cmd",
      "title": "Execute a Connectome Workbench command",
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    },
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    },
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